Updated templates for pandoc 2.11.3

6 files changed, 57 insertions, 13 deletions

diff --git a/affiliations.jats b/affiliations.jats
new file mode 100644
index 0000000..93238d2
--- /dev/null
+++ b/affiliations.jats
@@ -0,0 +1,38 @@
+$--
+$-- Affiliations
+$--
+$for(affiliation)$
+<aff id="aff-$affiliation.id$">
+$-- wrap affiliation if it has a known institution identifier
+$if(affiliation.group)$
+<institution content-type="group">$affiliation.group$</institution>
+$endif$
+$if(affiliation.department)$
+<institution content-type="dept">$affiliation.department$</institution>
+$endif$
+<institution-wrap>
+$if(affiliation.organization)$
+<institution>$affiliation.organization$</institution>
+$else$
+<institution>$affiliation.name$</institution>
+$endif$
+$if(affiliation.isni)$
+<institution-id institution-id-type="ISNI">$affiliation.isni$</institution-id>
+$endif$
+$if(affiliation.ringgold)$
+<institution-id institution-id-type="Ringgold">$affiliation.ringgold$</institution-id>
+$endif$
+$if(affiliation.ror)$
+<institution-id institution-id-type="ROR">$affiliation.ror$</institution-id>
+$endif$
+$for(affiliation.pid)$
+<institution-id institution-id-type="$affiliation.pid.type$">$affiliation.pid.id$</institution-id>
+$endfor$
+</institution-wrap>$if(affiliation.street-address)$,
+$for(affiliation.street-address)$
+<addr-line>$affiliation.street-address$</addr-line>$sep$,
+$endfor$
+$else$$if(affiliation.city)$, <city>$affiliation.city$</city>$endif$$endif$$if(affiliation.country)$,
+<country$if(affiliation.country-code)$ country="$affiliation.country-code$"$endif$>$affiliation.country$</country>$endif$
+</aff>
+$endfor$
diff --git a/article.jats_publishing b/article.jats_publishing
index b64425f..4bdb3f2 100644
--- a/article.jats_publishing
+++ b/article.jats_publishing
@@ -101,14 +101,15 @@ $endif$
 $if(author.email)$
 <email>$author.email$</email>
 $endif$
-$if(author.aff-id)$
-<xref ref-type="aff" rid="aff-$contrib.aff-id$"/>
-$endif$
+$for(author.affiliation)$
+<xref ref-type="aff" rid="aff-$author.affiliation$"/>
+$endfor$
 $if(author.cor-id)$
 <xref ref-type="corresp" rid="cor-$author.cor-id$"><sup>*</sup></xref>
 $endif$
 </contrib>
 $endfor$
+${ affiliations.jats() }
 </contrib-group>
 $endif$
 $if(article.author-notes)$
diff --git a/default.epub2 b/default.epub2
index f440134..685d102 100644
--- a/default.epub2
+++ b/default.epub2
@@ -48,7 +48,7 @@ $endif$
 $else$
 $if(coverpage)$
 <div id="cover-image">
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="100%" height="100%" viewBox="0 0 $cover-image-width$ $cover-image-height$" preserveAspectRatio="none">
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="100%" height="100%" viewBox="0 0 $cover-image-width$ $cover-image-height$" preserveAspectRatio="xMidYMid">
 <image width="$cover-image-width$" height="$cover-image-height$" xlink:href="../media/$cover-image$" />
 </svg>
 </div>
diff --git a/default.epub3 b/default.epub3
index 4f5bd66..fc4fa76 100644
--- a/default.epub3
+++ b/default.epub3
@@ -49,7 +49,7 @@ $endif$
 $else$
 $if(coverpage)$
 <div id="cover-image">
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="100%" height="100%" viewBox="0 0 $cover-image-width$ $cover-image-height$" preserveAspectRatio="none">
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="100%" height="100%" viewBox="0 0 $cover-image-width$ $cover-image-height$" preserveAspectRatio="xMidYMid">
 <image width="$cover-image-width$" height="$cover-image-height$" xlink:href="../media/$cover-image$" />
 </svg>
 </div>
diff --git a/default.jats_articleauthoring b/default.jats_articleauthoring
index f86bb2d..94c9295 100644
--- a/default.jats_articleauthoring
+++ b/default.jats_articleauthoring
@@ -34,14 +34,15 @@ $endif$
 $if(author.email)$
 <email>$author.email$</email>
 $endif$
-$if(author.aff-id)$
-<xref ref-type="aff" rid="aff-$contrib.aff-id$"/>
-$endif$
+$for(author.affiliation)$
+<xref ref-type="aff" rid="aff-$author.affiliation$"/>
+$endfor$
 $if(author.cor-id)$
 <xref ref-type="corresp" rid="cor-$author.cor-id$"><sup>*</sup></xref>
 $endif$
 </contrib>
 $endfor$
+${ affiliations.jats() }
 </contrib-group>
 $endif$
 $if(copyright)$
diff --git a/default.latex b/default.latex
index aad9ee3..1696615 100644
--- a/default.latex
+++ b/default.latex
@@ -89,6 +89,7 @@ $endif$
 $if(beamerarticle)$
 \usepackage{beamerarticle} % needs to be loaded first
 $endif$
+\usepackage{amsmath,amssymb}
 $if(fontfamily)$
 \usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
 $else$
@@ -97,17 +98,14 @@ $endif$
 $if(linestretch)$
 \usepackage{setspace}
 $endif$
-\usepackage{amsmath}
 \usepackage{ifxetex,ifluatex}
 \ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
   \usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
   \usepackage[utf8]{inputenc}
   \usepackage{textcomp} % provide euro and other symbols
-  \usepackage{amssymb}
 \else % if luatex or xetex
 $if(mathspec)$
   \ifxetex
-    \usepackage{amssymb}
     \usepackage{mathspec}
   \else
     \usepackage{unicode-math}
@@ -256,7 +254,7 @@ $if(highlighting-macros)$
 $highlighting-macros$
 $endif$
 $if(tables)$
-\usepackage{longtable,booktabs}
+\usepackage{longtable,booktabs,array}
 \usepackage{calc} % for calculating minipage widths
 $if(beamer)$
 \usepackage{caption}
@@ -336,7 +334,10 @@ $for(polyglossia-otherlangs)$
   \setotherlanguage[$for(polyglossia-otherlangs.options)$$polyglossia-otherlangs.options$$sep$,$endfor$]{$polyglossia-otherlangs.name$}
 $endfor$
 \else
-  \usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
+  \usepackage[$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
+% get rid of language-specific shorthands (see #6817):
+\let\LanguageShortHands\languageshorthands
+\def\languageshorthands#1{}
 $if(babel-newcommands)$
   $babel-newcommands$
 $endif$
@@ -390,6 +391,9 @@ $if(csl-refs)$
 \newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth - \csllabelwidth}{#1}\break}
 \newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
 $endif$
+$if(csquotes)$
+\usepackage{csquotes}
+$endif$
 
 $if(title)$
 \title{$title$$if(thanks)$\thanks{$thanks$}$endif$}